| Nov 22 | Presenter: Sam Whitby Paper: Zhang, Z., and Lu, Z. (2024) Single-molecule Automata: Harnessing Kinetic-Thermodynamic Discrepancy for Temporal Pattern Recognition ArXiv preprint: arXiv:2409.19803 |
| Nov 29 | Presenter: Emir Sezik
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| Dec 5 | Physics of Life Network seminar series Alexander Mietke (Oxford) Emergent morphologies of active surfaces Venue: G47A Flowers |
| Dec 6 | Presenter: Gunnar Pruessner
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| Dec 12 | Physics of Life Summer ECR Symposium |
| Dec 13 | Presenter: Robert Endres
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| Jan 5 | Presenter: Sulaimaan Lim Paper: Vasudha Srivastava et al. (2023) Configurational entropy is an intrinsic driver of tissue structural heterogeneity bioRxiv 2023.07.01.546933 |
| Jan 12 | Presenter: Smitha Maretvadakethope Paper: Anupam Dey and Debashis Barik (2021) Potential Landscapes, Bifurcations, and Robustness of Tristable Networks ACS Synth. Biol. 10, 391–401 |
| Jan 19 | Physics of Life Network seminar series Ard Louis (Oxford) Does evolution have a built-in Occam’s razor? |
| Jan 26 | Presenter: Robert Endres Pape: Gautam Reddy, Boris I Shraiman, Massimo Vergassola (2022) Sector search strategies for odor trail tracking Proc Natl Acad Sci USA 119(1): e2107431118 |
| Feb 2 | Presenter: Sam Whitby Paper: Omer Karin and Uri Alon (2021) Temporal fluctuations in chemotaxis gain implement a simulated-tempering strategy for efficient navigation in complex environments iScience 24, 102796 |
| Feb 9 | Presenter: Eloise Lardet Paper: Wesley J. M. Ridgway, Mohit P. Dalwadi, Philip Pearce, and S. Jonathan Chapman (2023) Motility-Induced Phase Separation Mediated by Bacterial Quorum Sensing Phys. Rev. Lett. 131, 228302 |
| Feb 16 | Presenter: Gunnar Pruessner Paper: Chul-Ung Woo, Heiko Rieger, Jae Dong Noh (2022) Suppression of discontinuous phase transitions by particle diffusion Phys Rev E 105 054144 |
| Feb 23 | Physics of Life Network seminar series Kirsty Wan (Exeter) Active motility and navigation strategies at the microscale Venue: SECB 290 |
| Mar 1 | Presenter: Antonio Matas Gil Paper: Barrio et al. (2021) Routes to tripod gait movement in hexapods Neurocomputing 461, 679-695 |
| Mar 8 | Presenter: Chiu Fan Lee Paper: Liangyu Zhang, Weston Stauffer, David Zwicker, Abby F. Dernburg Crossover patterning through kinase-regulated condensation and coarsening of recombination nodules bioRxiv 2021.08.26.457865; doi: https://doi.org/10.1101/2021.08.26.457865 |
| Mar 15 | Physics of Life Network seminar series Stefano Bo (KCL) Single-molecule trajectories in chemically active condensates |
| Mar 22 | Presenter: Patrick Jentsch Paper: Maxx Miller, John Toner Phase separation in ordered polar active fluids: A new Universality class ArXiv:2401.05996 |
| Apr 12 | Presenter: Thibault Bertrand Paper: I. Di Terlizzi et al. (2024) Variance sum rule for entropy production Science 383, 971-976 |
| Apr 19 | Presenter: Tina Jia Paper: C Kurzthaler, et al. (2021) A geometric criterion for the optimal spreading of active polymers in porous media Nature communications 12 7088 |
| Apr 26 | Presenter: Ruben Perez-Carrasco Papers: i) Isocost Lines Describe the Cellular Economy of Genetic Circuits. Gyorgy et al., Biophysical Journal 2015 ii) A Model for the Spatiotemporal Design of Gene Regulatory Circuits. Stoof et al., ACS Synthetic Biology 2019 iii) Reprogramming genetic circuits using space. Alejaldre et al., BioRxiv 2024 |
| May 3 | Presenter: Callum Britton Paper: Y. Zhang, and É. Fodor (2023) Pulsating active matter Phys. Rev. Lett. 131, 238302 |
| May 10 | Presenter: Daniel O'Hanlon Paper: V. Bergen et al. (2020) Generalizing RNA velocity to transient cell states through dynamical modeling Nat Biotechnol 38, 1408–1414 |
| May 17 | Presenter: Alastar Phelan Paper: Metz-Zumaran et al. (2024) The population context is a driver of the heterogeneous response of epithelial cells to interferons Molecular Systems Biology 20, 242 - 275 |
| May 24 | Physics of Life Network seminar series Katelyn Spillane (Imperial) The mechanics of B cell activation in the immune synapse Venue: RSM 303 |
| May 31 | Presenter: Sulaimaan Lim Paper: Brauns Fridtjof, Claussen Nikolas H., Wieschaus Eric F., Shraiman Boris I. (2024) The Geometric Basis of Epithelial Convergent Extension eLife 13:RP95521 |
| Jun 7 | Presenter: Smitha Maretvadakethope Paper: Walton, T., Gui, M., Velkova, S. et al. (2023) Axonemal structures reveal mechanoregulatory and disease mechanisms Nature 618, 625–633 |
| Jun 14 | Presenter: Robert Endres Paper: Julian Rode, Maja Novak, Benjamin M. Friedrich (2024) Information theory of chemotactic agents using both spatial and temporal gradient-sensing bioRxiv 2023.10.14.562229 |
| Jun 21 | Presenter: Sam Whitby Paper: Reuveni, S., Ehrenberg, M. and Paulsson, J. (2017) Ribosomes are optimized for autocatalytic production Nature 547, 293–297 |
| Jun 28 | Presenter: Eloise Lardet Paper: Koehler, Lara, Pierre Ronceray, and Martin Lenz (2023) How do particles with complex interactions self-assemble? Preprint: arXiv:2312.06350 |
| Jul 5 | Presenter: Chiu Fan Lee Paper: Hugues Chaté and Alexandre Solon (2024) Dynamic Scaling of Two-Dimensional Polar Flocks Phys. Rev. Lett. 132, 268302 |
| Jul 12 | Presenter: Emir Sezik Paper: Hal Tasaki (2020) Hohenberg-Mermin-Wagner-Type Theorems for Equilibrium Models of Flocking Phys. Rev. Lett. 125, 220601 |
| Jul 19 | Presenter: Gunnar Pruessner Paper: Hal Tasaki (2020) Hohenberg-Mermin-Wagner-Type Theorems for Equilibrium Models of Flocking Phys. Rev. Lett. 125, 220601 |
| Jul 26 | Physics of Life Summer ECR Symposium Time: 1-5pm |
| Sep 27 | Presenter: Eloise Lardet Papers: Sabine H.L. Klapp and Kim L. Kreienkamp (2024) Dynamical structures in phase-separating non-reciprocal polar active mixtures arXiv:2404.06305v2 Non-reciprocal alignment induces asymmetric clustering in active mixtures arXiv:2403.19291v2 |
| Oct 4 | Presenter: Smitha Maretvadakethope
Paper: Hubert, A., Tabuteau, H., Farasin, J. et al. (2024) Fluid flow drives phenotypic heterogeneity in bacterial growth and adhesion on surfaces Nat Commun 15, 6161 |
| Oct 11 | Presenter: Daniel O'Hanlon Paper: Sandoval-Velasco, M. et al. (2024) Three-dimensional genome architecture persists in a 52,000-year-old woolly mammoth skin sample Cell, 187(14), 3541-3562 |
| Oct 18 | Presenter: Alastar Phelan Paper: Hallinen et al. Community behaviours of bacteria in flow: Divergent roles for transport and collective morphology bioRxiv 2023.11.22.568348. |
| Oct 24 | Physics of Life Network seminar series Rafael Tapia-Rojo (KCL) Mechanochemical regulation of focal adhesion proteins Venue: SECB 290 Link classroom |
| Oct 25 | Presenter: Chiu Fan Lee Paper: Ran Li, et al (2021) E2 and gamma distributions in polygonal networks Phys. Rev. Research 3, L042001 |
| Nov 1 | Presenter: Jacob Knight Paper: Julius Degünther, Jann van der Meer, and Udo Seifert (2024) General theory for localizing the where and when of entropy production meets single-molecule experiments PNAS 121, e2405371121 |
| Nov 8 | Presenter: Tina Jia Paper: Wu, Song, Jia-Xiang Li, and Qun-Li Lei (2022) Facilitated dynamics of an active polymer in 2D crowded environments with obstacles Soft Matter 18, 9263-9272 |
| Nov 14 | Physics of Life Network seminar series Karina Pombo-Garcia (Oxford) Membrane prewetting by condensates promotes tight-junction belt formation Venue: RSM 131 |